Volume 6; Issue 1 Suppleme

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BMC Bioinformatics
Volume 6; Issue 1 Suppleme

BMC Bioinformatics

Volume 6; Issue 1 Suppleme

1

Overview of BioCreAtIvE: critical assessment of information extraction for biology

Lynette Hirschman, Alexander Yeh, Christian Blaschke, Alfonso Valencia

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 303 KB

english, 2005

2

Text Detective: a rule-based system for gene annotation in biomedical texts

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 384 KB

english, 2005

3

Overview of BioCreAtIvE task 1B: normalized gene lists

Lynette Hirschman, Marc Colosimo, Alexander Morgan, Alexander Yeh

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 262 KB

english, 2005

4

Data preparation and interannotator agreement: BioCreAtIvE Task 1B

Marc E Colosimo, Alexander A Morgan, Alexander S Yeh, Jeffrey B Colombe, Lynette Hirschman

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 261 KB

english, 2005

5

Automatically annotating documents with normalized gene lists

Jeremiah Crim, Ryan McDonald, Fernando Pereira

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 226 KB

english, 2005

6

ProMiner: rule-based protein and gene entity recognition

Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevissen, Ralf Zimmer, Juliane Fluck

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 284 KB

english, 2005

7

A simple approach for protein name identification: prospects and limits

Katrin Fundel, Daniel Güttler, Ralf Zimmer, Joannis Apostolakis

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 276 KB

english, 2005

8

Evaluation of BioCreAtIvE assessment of task 2

Christian Blaschke, Eduardo Andres Leon, Martin Krallinger, Alfonso Valencia

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 443 KB

english, 2005

9

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA

Evelyn B Camon, Daniel G Barrell, Emily C Dimmer, Vivian Lee, Michele Magrane, John Maslen, David Binns, Rolf Apweiler

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 729 KB

english, 2005

10

Learning Statistical Models for Annotating Proteins with Function Information using Biomedical Text

Soumya Ray, Mark Craven

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 255 KB

english, 2005

11

A sentence sliding window approach to extract protein annotations from biomedical articles

Martin Krallinger, Maria Padron, Alfonso Valencia

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 373 KB

english, 2005

12

BioCreAtIvE Task 1A: gene mention finding evaluation

Alexander Yeh, Alexander Morgan, Marc Colosimo, Lynette Hirschman

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 322 KB

english, 2005

13

Protein annotation as term categorization in the gene ontology using word proximity networks

Karin Verspoor, Judith Cohn, Cliff Joslyn, Sue Mniszewski, Andreas Rechtsteiner, Luis M Rocha, Tiago Simas

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1022 KB

english, 2005

14

Finding genomic ontology terms in text using evidence content

Francisco M Couto, Mário J Silva, Pedro M Coutinho

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 228 KB

english, 2005

15

Mining protein function from text using term-based support vector machines

Simon B Rice, Goran Nenadic, Benjamin J Stapley

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 290 KB

english, 2005

16

Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot

Frédéric Ehrler, Antoine Geissbühler, Antonio Jimeno, Patrick Ruch

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 305 KB

english, 2005

17

GENETAG: a tagged corpus for gene/protein named entity recognition

Lorraine Tanabe, Natalie Xie, Lynne H Thom, Wayne Matten, W John Wilbur

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 312 KB

english, 2005

18

BioCreAtIvE Task1A: entity identification with a stochastic tagger

Shuhei Kinoshita, K Bretonnel Cohen, Philip V Ogren, Lawrence Hunter

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 257 KB

english, 2005

19

Exploring the boundaries: gene and protein identification in biomedical text

Jenny Finkel, Shipra Dingare, Christopher D Manning, Malvina Nissim, Beatrice Alex, Claire Grover

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 260 KB

english, 2005

20

Identifying gene and protein mentions in text using conditional random fields

Ryan McDonald, Fernando Pereira

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 280 KB

english, 2005

21

Recognition of protein/gene names from text using an ensemble of classifiers

GuoDong Zhou, Dan Shen, Jie Zhang, Jian Su, SoonHeng Tan

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 245 KB

english, 2005

22

Gene/protein name recognition based on support vector machine using dictionary as features

Tomohiro Mitsumori, Sevrani Fation, Masaki Murata, Kouichi Doi, Hirohumi Doi

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 287 KB

english, 2005

23

Systematic feature evaluation for gene name recognition

Jörg Hakenberg, Steffen Bickel, Conrad Plake, Ulf Brefeld, Hagen Zahn, Lukas Faulstich, Ulf Leser, Tobias Scheffer

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 352 KB

english, 2005